Encode_Combined_Gm12878_H1hesc_Helas3_Hepg2_Huvec_K562.bed.gz:

ENCODE regions by Hoffman, Michael M., et al. "Integrative annotation of chromatin elements from ENCODE data." Nucleic acids research (2012): gks1284.



GERP_hg19.bw:

GERP scores for human genome hg19/GRCh37. http://mendel.stanford.edu/SidowLab/downloads/gerp/



Mappability_1000Genomes_pilot_mask.bed.gz:

Mappability/accessibility regions provided by 1000 Genomes Project. Can be used to filter false positive calls from low-complexity genomic regions
ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/supporting/accessible_genome_masks/README.accessible_genome_mask.20140520



TFbinding_sites_SELEX_GRCh37.bed.gz:

Transcription factor binding motifs from Jolma, A. et al. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527, 384-388 (2015).
aligned with MOODS to human genome (GRCh37) with the affinity score threshold 6. 

TFmotifs folder contains representative motifs from Jolma, A et al.


mcap_v1_0_forBP.bed.gz:

Variant effect prediction track by Jagadeesh, K. A. et al. M-CAP eliminates a majority of variants of uncertain significance in clinical exomes at high sensitivity. Nat. Genet. 48, 1581-1586 (2016).